BIOINFORMATICS AND SYSTEMS BIOLOGY






The Systems Biology of Molecular and Cellular Networks lab combines computational system biology modelling techniques with experiments to investigate the dynamics of molecular and cellular interaction networks.
Structure, dynamics and interactions of postsynaptic proteins
Attila Csikász-Nagy
Room: 212
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Zoltán Gáspári
Room: 233
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Biological databases, machine learning.


Genome bioinformatics, microbial communities, microbiomes. More
Balázs Ligeti
Room: 411
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Sándor Pongor
Room: 412
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Analysis and control of biologically motivated dynamical systems; nonnegative and kinetic systems; biochemical reaction networks.


Developing online tools for transcriptomics and genomics. Translational medicine with focus on oncology. Identification and validation of cancer biomarkers. More
Gábor Szederkényi
Room: 307
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Balázs Győrffy

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Design, construction and testing of micromechanical sensors and high density microelectrode arrays to record neuronal activity. Non-invasive brain-machine interfaces and software tools for human applications, epileptiform activity and pysiological oscillations in the human brain.


computational modelling of microbial communities and their behavior, microbiome bioinformatics.
István Ulbert
Room: 317
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János Juhász
Room: 411
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COURSES


Data visualization in Systems Biology and Bioinformatics (Esztergom, 2020, (Juhász-Ligeti-Győrrfy-Pongor))


Systems Biology a Bionics Perspectives (NDU, Indiana, Gregory Timp, Attila Csikász-Nagy, Zoltán Gáspári)


Computational Systems Biology (PPCU, Budapest, Attila Csikász-Nagy)


Integrated Structural Bioinformatics (PPCU, Budapest, Zoltán Gáspári)


Java programming for bionics (PPCU, Budapest, Zoltán Gáspári)


Introduction to bioinformatics (PPCU, Budapest, Sándor Pongor, Balázs Ligeti, János Juhász)


Computer methods in molecular and systems biology (ICGEB, Trieste, Sándor Pongor, Mike Myers)


Parameter Estimation (PPCU, Budapest, Gábor Szederkényi)


Computer Controlled Systems (CCS) (PPCU, Budapest, Gábor Szederkényi)


Quantitative Description and Analysis of Nonlinear Molecular Processes (Graduate level) (PPCU, Budapest, Gábor Szederkényi, Dávid Csercsik )


Robotics (PPCU, Budapest, György Cserey, Gábor Szederkényi)


Systems Bioinformatics (PPCU, Budapest, Sándor Pongor, Balázs Ligeti, János Juhász)




WORKSHOPS


From Protein Complexes to Cell-Cell Communication (Esztergom, 2019, Csikász-Nagy, Gáspári, Pongor)


Computer methods in molecular and systems biology (Esztergom, 2018, Csikász-Nagy, Szederkényi)


PhD Workshop on Systems and Control and on Advanced Nonlinear Control Methods (Veszprém, 2014-, Hangos, Magyar and Szederkényi)


Bionics I. (Torino, 2013, Gilli, Roska, Pongor)


Bionics II. (Budapest, 2013, Gilli, Roska, Pongor)
























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